234 lines
8.5 KiB
Bash
Executable File
234 lines
8.5 KiB
Bash
Executable File
#!/bin/bash
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################################################################
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#
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# Script to launch a set of STATION_ASF simulations
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#
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# Ocean-only version....
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#
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# L. Brodeau, 2020
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#
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################################################################
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CONFIG="STATION_ASF" ; # general name of the configuration
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CONFIG_BLD="STATION_ASF2" ; # name of config as build in NEMO... (directory inside "tests" actually contains the compiled test-case?)
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# Atmo + SSX forcing to use and sea-ice support?
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# => FORCING: name of forcing
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# => i_sea_ice: whether to compute fluxes over sea-ice as well
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# => SFORC: string sufficient to copy relevant files as in "*${SFORC}*.nc"
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FORCING="PAPA" ; i_sea_ice=0 ; SFORC="Station_PAPA_50N-145W"
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#FORCING="ERA5_NorthGreenland" ; i_sea_ice=1 ; SFORC="ERA5_NorthGreenland_surface_84N_-36E_1h" ; # WITH ice/air flux computation
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#FORCING="ERA5_NorthGreenland" ; i_sea_ice=0 ; SFORC="ERA5_NorthGreenland_surface_84N_-36E_1h" ; # "ERA5_arctic" WITHOUT ice/air flux computation
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# Root directory NEMOGCM reference depository where to fetch compiled STATION_ASF nemo.exe + default namelists:
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NEMO_REF_DIR="`dirname ${PWD} | sed -e 's|/tests/STATION_ASF||g'`" ; # that should normally do the trick!
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# NEMOGCM root directory where to fetch compiled STATION_ASF nemo.exe:
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SASF_WRK_DIR="${NEMO_REF_DIR}/tests/${CONFIG_BLD}"
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# DATA_IN_DIR => Directory containing sea-surface + atmospheric forcings:
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DATA_IN_DIR="${NEMO_REF_DIR}/tests/${CONFIG}/input_data"
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# Directory where to run the simulation:
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PROD_DIR="${HOME}/tmp/${CONFIG}"
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# MPI launch command for your system
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# Even though we are running on 1 proc here, NEMO has likely been compiled with MPI,
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# if it's not the case then just leave "MPI_LAUNCH" void...
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MPI_LAUNCH="mpirun -n 1"
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####### End of normal user configurable section #######
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#================================================================================
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iconv_1d=1
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if [ "`which ncks`" = "" ]; then
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echo
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echo "WARNING: you do not seem to have NCO installed here... You should!"
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echo " => anyway! will do without, but output netCDF files will remaine 3x3 in space :( "
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echo
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iconv_1d=0
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sleep 3
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fi
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HERE=`pwd`
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echo
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# Is the nemo.exe of STATION_ASF compiled with sea-ice support (SI3) ?
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i_si3=0
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FCPP="${SASF_WRK_DIR}/cpp_${CONFIG_BLD}.fcm"
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if [ ! -f ${FCPP} ]; then echo " Mhhh, we could not find 'cpp_STATION_ASF.fcm' into `dirname ${FCPP}` !"; exit; fi
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ca=`cat ${FCPP} | grep 'key_si3'`
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if [ "${ca}" = "" ]; then
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echo " *** NEMO was NOT compiled with sea-ice support (SI3) !" ; echo
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if [ ${i_sea_ice} -eq 1 ]; then
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echo " ===> so you cannot request ice-air flux computation !"
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echo " ===> please set i_sea_ice=0 or compile STATION_ASF with CPP key 'key_si3' !"
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echo ; exit
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fi
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else
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echo " *** NEMO was apparently compiled with sea-ice support (SI3) !" ; echo
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i_si3=1
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fi
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# Ok things are a bit different whether we compute fluxes over open ocean only or open ocean + sea-ice
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DIR_F=`echo ${FORCING} | cut -d'_' -f1` ; # "ERA5_blabla" => "ERA5" !
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if [ ${i_sea_ice} -eq 1 ]; then
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# OPEN-OCEAN/AIR + SEA-ICE/AIR flux computation
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# - simpler if we only use one Open-ocean/air algo (ECMWF)
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LIST_OA_ALGOS="ECMWF" ; # list of air-sea algorithms to test
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LIST_IA_ALGOS="AN05 LG15 LU12 CSTC" ; # list of air-ice algorithms to test
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DIR_NL=${DIR_F}/oce+ice ; # where to fetch the namelists from...
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else
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# Only OPEN-OCEAN/AIR flux computation
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LIST_OA_ALGOS="NCAR ECMWF COARE3p6 ANDREAS"; # list of air-sea algorithms to test
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LIST_IA_ALGOS=""
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DIR_NL=${DIR_F}/oce ; # where to fetch the namelists from...
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fi
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if [ ! -d ${DIR_NL} ]; then echo " Mhhh, ${DIR_NL} not found !"; exit; fi
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# NEMO executable to use is:
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NEMO_EXE="${SASF_WRK_DIR}/BLD/bin/nemo.exe"
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if [ ! -f ${NEMO_EXE} ]; then echo " Mhhh, no compiled 'nemo.exe' found into `dirname ${NEMO_EXE}` !"; exit; fi
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SASF_EXPREF=`pwd` ; # STATION_ASF EXPREF directory from which to use namelists and XIOS xml files...
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CFGS_SHARED="${NEMO_REF_DIR}/cfgs/SHARED"
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if [ ! -d ${CFGS_SHARED} ]; then echo "PROBLEM!!! => could not find directory ${CFGS_SHARED} !"; exit; fi
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if [ ! -d ${DATA_IN_DIR} ]; then echo "PROBLEM!!! => could not find directory 'input_data' with input forcing..."; exit; fi
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cdt_cmpl="`\ls -l ${NEMO_EXE} | cut -d' ' -f 6,7,8`"
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echo "###########################################################"
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echo "# S T A T I O N A i r - S e a F l u x #"
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echo "###########################################################"
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echo
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echo " * NEMO reference root directory is: ${NEMO_REF_DIR}"
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echo " * STATION_ASF work directory is: ${SASF_WRK_DIR}"
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echo " ==> NEMO EXE to use: ${NEMO_EXE}"
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echo " ==> compiled: ${cdt_cmpl} !"
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echo
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echo " * Input forcing data into: ${DATA_IN_DIR}"
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echo " * Production will be done into: ${PROD_DIR}"
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echo " * Directory in which namelists and xml files are fetched:"
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echo " ==> ${SASF_EXPREF}"
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echo
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sleep 2
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mkdir -p ${PROD_DIR}
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rsync -avP ${NEMO_EXE} ${PROD_DIR}/
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ln -sf ${NEMO_EXE} ${PROD_DIR}/nemo.exe.lnk
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# XIOS xml file
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################
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list_xml_ref="field_def_nemo-oce.xml domain_def_nemo.xml grid_def_nemo.xml"
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list_xml_cfg="iodef.xml file_def_nemo-oce.xml"
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fcntxt="context_nemo_OCE.xml"
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if [ ${i_sea_ice} -eq 1 ]; then
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list_xml_ref+=" field_def_nemo-ice.xml"
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list_xml_cfg+=" file_def_nemo-ice.xml"
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fcntxt="context_nemo_OCE+ICE.xml"
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fi
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# The "context_nemo.xml" file:
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if [ ! -f ${SASF_EXPREF}/${fcntxt} ]; then echo " Mhhh, ${fcntxt} not found into ${SASF_EXPREF} !"; exit; fi
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rsync -avPL ${SASF_EXPREF}/${fcntxt} ${PROD_DIR}/context_nemo.xml
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# All remaining "*.xml" files:
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for ff in ${list_xml_cfg} ; do
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if [ ! -f ${SASF_EXPREF}/${ff} ]; then echo " Mhhh, ${ff} not found into ${SASF_EXPREF} !"; exit; fi
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rsync -avPL ${SASF_EXPREF}/${ff} ${PROD_DIR}/
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done
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for ff in ${list_xml_ref} ; do
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if [ ! -f ${CFGS_SHARED}/${ff} ]; then echo " Mhhh, ${ff} not found into ${CFGS_SHARED} !"; exit; fi
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rsync -avPL ${CFGS_SHARED}/${ff} ${PROD_DIR}/
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done
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# Copy forcing to work directory:
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echo ; echo "Forcing files to use:"
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\ls -l ${DATA_IN_DIR}/*${SFORC}*.nc
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echo
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rsync -avPL ${DATA_IN_DIR}/*${SFORC}*.nc ${PROD_DIR}/
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echo; echo
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if [ "${LIST_IA_ALGOS}" = "" ]; then LIST_IA_ALGOS="none"; fi
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echo
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for OA_A in ${LIST_OA_ALGOS}; do
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for IA_A in ${LIST_IA_ALGOS}; do
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echo
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CASE="${OA_A}"
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if [ ${i_sea_ice} -eq 1 ] && [ "${IA_A}" != "none" ]; then CASE="${OA_A}-${IA_A}"; fi
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echo ; echo
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echo "======================================================================="
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echo " Going for experiment: ${CASE} bulk param. with ${FORCING} forcing "
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echo "======================================================================="
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echo
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scase=`echo "${CASE}" | tr '[:upper:]' '[:lower:]'`
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rm -f ${PROD_DIR}/namelist_cfg
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fnml="${SASF_EXPREF}/${DIR_NL}/namelist_${scase}_cfg"
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if [ ! -f ${fnml} ]; then echo " Mhhh, test namelist ${fnml} not found !"; exit; fi
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echo " ===> namelist to use is: ${DIR_NL}/namelist_${scase}_cfg !"; echo
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# The namelists:
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#rsync -avPL ${fnml} ${PROD_DIR}/namelist_cfg
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sed -e "s|<FORCING>|${FORCING}|g" -e "s|<SFORC>|${SFORC}|g" ${fnml} > ${PROD_DIR}/namelist_cfg
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rsync -avPL ${CFGS_SHARED}/namelist_ref ${PROD_DIR}/namelist_ref
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if [ ${i_sea_ice} -eq 1 ]; then
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rsync -avPL ${SASF_EXPREF}/namelist_ice_cfg ${PROD_DIR}/namelist_ice_cfg
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rsync -avPL ${CFGS_SHARED}/namelist_ice_ref ${PROD_DIR}/namelist_ice_ref
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fi
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cd ${PROD_DIR}/
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echo
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echo "Launching NEMO ! (==> ${MPI_LAUNCH} ./nemo.exe)"
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${MPI_LAUNCH} ./nemo.exe 1>out_nemo.out 2>err_nemo.err
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echo "Done!"
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echo
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# Moving output files:
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mkdir -p output
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mv -f ${CONFIG}-${CASE}_${FORCING}_*_grid*.nc output/
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if [ ${i_sea_ice} -eq 1 ]; then mv -f ${CONFIG}-${CASE}_${FORCING}_*_icemod.nc output/; fi
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# Saving logs:
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mkdir -p ${CASE}_${FORCING}_log
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mv -f *.out *.err ocean.output output.namelist.dyn ${CASE}_${FORCING}_log/
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if [ ${iconv_1d} -eq 1 ]; then
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# Making 3x3 to 1 !
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cd output/
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list=`\ls ${CONFIG}*${CASE}_${FORCING}_*.nc | grep -v '_restart_'| grep -v '_1p.nc'`
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for ff in ${list}; do
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echo
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fn=`echo ${ff} | sed -e "s|.nc|_1p.nc|g"`
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CMD="ncks -O -d x,1 -d y,1 ${ff} -o ${fn}"
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echo " *** ${CMD}"; ${CMD}
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echo
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done
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fi
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done
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done
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