Nemo-NAA10km_nemo_4.2.2/sette/BATCH_TEMPLATE/batch-X64_BELENOS_INTEL_IMPI

#!/usr/bin/env bash

#SBATCH -J sette
#SBATCH -o sette.%j.out
#SBATCH -e sette.%j.err
#SBATCH --export=ALL
#SBATCH --parsable
#SBATCH --exclusive
#SBATCH -N 1

#SBATCH -p normal256
#SBATCH --time=01:00:00
##SBATCH --time=00:15:00

#SBATCH -A smer
##SBATCH -A cmems

#SBATCH --qos=normal
##SBATCH --qos=coper


# Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these
# (via sed operating on this template job file). 
#
  echo " ";
  OCORES=NPROCS
  XCORES=NXIOPROCS
  O_PER_NODE=32
  X_PER_NODE=8
  if [ $XCORES -le $X_PER_NODE ]; then X_PER_NODE=$XCORES; fi
  if [ $OCORES -le $O_PER_NODE ]; then O_PER_NODE=$OCORES; fi
  export SETTE_DIR=DEF_SETTE_DIR

###############################################################
#
#
# load sette functions (only post_test_tidyup needed)
#
  . ${SETTE_DIR}/all_functions.sh
###############################################################
#
# modules to load
module purge
module load gcc/9.2.0 intel/2018.5.274 intelmpi/2018.5.274 phdf5/1.8.18 netcdf_par/4.7.1_V2
#module load xios-2.5_rev1903
export XIOS_DIR="/home/ext/mr/smer/samsong/SRC/XIOS/trunk/BEL_INTEL18_r2134"
export XIOS_BIN="${XIOS_DIR}/bin"
export XIOS_BIN_DIR=${XIOS_BIN}
export XIOS_INC="${XIOS_DIR}/inc"
export XIOS_INC_DIR=${XIOS_INC}
export XIOS_LIB="${XIOS_DIR}/lib"
export XIOS_LIB_DIR=${XIOS_LIB}
export XIO_HOME=${XIOS_DIR}

# Don't remove neither change the following line
# BODY
#
# Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these
# (via sed operating on this template job file). Note that the number of compute nodes required
# is also set by the fcm_job.sh on the PBS select header line above.
#
# These variables are needed by post_test_tidyup function in all_functions.sh
#
  export INPUT_DIR=DEF_INPUT_DIR
  export CONFIG_DIR=DEF_CONFIG_DIR
  export TOOLS_DIR=DEF_TOOLS_DIR
  export NEMO_VALIDATION_DIR=DEF_NEMO_VALIDATION
  export NEW_CONF=DEF_NEW_CONF
  export CMP_NAM=DEF_CMP_NAM
  export TEST_NAME=DEF_TEST_NAME
  export EXE_DIR=DEF_EXE_DIR
  ulimit -a
  ulimit -s unlimited
#
# end of set up
###############################################################
#
# change to the working directory 
#
  cd $EXE_DIR

  echo Running on host `hostname`
  echo Time is `date`
  echo Directory is `pwd`
# 
#  Run the parallel MPI executable 
#

  # Comm/Fabric
  # -----------
  export DAPL_ACK_RETRY=7
  export DAPL_ACK_TIMER=20
  export DAPL_IB_SL=0
  export DAPL_UCM_CQ_SIZE=8192
  export DAPL_UCM_DREQ_RETRY=4
  export DAPL_UCM_QP_SIZE=8192
  export DAPL_UCM_REP_TIME=8000
  export DAPL_UCM_RTU_TIME=8000
  export DAPL_UCM_WAIT_TIME=10000
  export I_MPI_CHECK_DAPL_PROVIDER_COMPATIBILITY=0
  export I_MPI_CHECK_DAPL_PROVIDER_MISMATCH=none
  export I_MPI_DAPL_RDMA_MIXED=enable
  export I_MPI_DAPL_SCALABLE_PROGRESS=1
  export I_MPI_DAPL_TRANSLATION_CACHE=1
  export I_MPI_DAPL_UD_DIRECT_COPY_THRESHOLD=65536
  export I_MPI_DAPL_UD=on
  export I_MPI_FABRICS=shm:dapl
  export I_MPI_DAPL_PROVIDER=ofa-v2-mlx5_0-1u
  export I_MPI_FALLBACK=disable
  export I_MPI_FALLBACK_DEVICE=disable
  export I_MPI_DYNAMIC_CONNECTION=1
  export I_MPI_FAST_COLLECTIVES=1
  export I_MPI_LARGE_SCALE_THRESHOLD=8192
  # File system
  # -----------
  export I_MPI_EXTRA_FILESYSTEM_LIST=lustre
  export I_MPI_EXTRA_FILESYSTEM=on
  # Slurm
  # -----
  export I_MPI_HYDRA_BOOTSTRAP=slurm
  export I_MPI_SLURM_EXT=0
  # Force kill job
  # --------------
  export I_MPI_JOB_SIGNAL_PROPAGATION=on
  export I_MPI_JOB_ABORT_SIGNAL=9
  # Extra
  # -----
  export I_MPI_LIBRARY_KIND=release_mt
  export EC_MPI_ATEXIT=0
  export EC_PROFILE_HEAP=0
  # Process placement (cyclic)
  # --------------------------
  export I_MPI_JOB_RESPECT_PROCESS_PLACEMENT=off
  export I_MPI_PERHOST=1
  # Process pinning
  # ---------------
  export I_MPI_PIN=enable
  export I_MPI_PIN_PROCESSOR_LIST="allcores:map=scatter" # map=spread

  if [ $XCORES -gt 0 ]; then
#
#  Run MPMD case
#
     #XIOS will run on a separate node so will run in parallel queue
     if [ ! -f ./xios_server.exe ] && [ -f ${XIO_HOME}/bin/xios_server.exe ]; then
        cp ${XIO_HOME}/bin/xios_server.exe .
     fi
     if [ ! -f ./xios_server.exe ]; then
        echo "./xios_server.exe not found"
        echo "run aborted"
        exit
     fi

#    cat > mpmd.conf <<EOF
#0-$((OCORES-1)) ./nemo
#${OCORES}-39 ./xios_server.exe
#EOF
    cat > mpmd.conf <<EOF
-n ${OCORES} ./nemo
-n ${XCORES} ./xios_server.exe
EOF

#     echo time srun --cpu_bind=cores --mpi=pmi2 -m cyclic -n 40 --multi-prog ./mpmd.conf
#          time srun --cpu_bind=cores --mpi=pmi2 -m cyclic -n 40 --multi-prog ./mpmd.conf
     echo time mpiexec.hydra -configfile ./mpmd.conf
          time mpiexec.hydra -configfile ./mpmd.conf
#
  else
#
# Run SPMD case
#
#    echo time srun --cpu_bind=cores --mpi=pmi2 -m cyclic -n ${OCORES} ./nemo
#         time srun --cpu_bind=cores --mpi=pmi2 -m cyclic -n ${OCORES} ./nemo
     echo time mpiexec.hydra -n ${OCORES} ./nemo
          time mpiexec.hydra -n ${OCORES} ./nemo
  fi
#

#
  post_test_tidyup
# END_BODY
# Don't remove neither change the previous line
  exit