91 lines
2.3 KiB
Plaintext
Executable File
91 lines
2.3 KiB
Plaintext
Executable File
#/bin/bash
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#!
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#PBS -N nemo_sette
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#PBS -l walltime=00:30:00
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#PBS -j oe
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#PBS -q normal
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#PBS -V
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#PBS -l SELECT
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export PBS_O_WORKDIR=$(readlink -f $PBS_O_WORKDIR)
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export OMP_NUM_THREADS=1
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cd $PBS_O_WORKDIR
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export XIO_HOME=$xios_path
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#
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echo " ";
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export OMP_NUM_THREADS=1
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O_PER_NODE=32
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X_PER_NODE=4
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OCORES=NPROCS
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XCORES=NXIOPROCS
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if [ $OCORES -le 32 ] ; then O_PER_NODE=$OCORES; fi
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export SETTE_DIR=DEF_SETTE_DIR
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###############################################################
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#
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#
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# load sette functions (only post_test_tidyup needed)
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#
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. ${SETTE_DIR}/all_functions.sh
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###############################################################
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#
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# Don't remove neither change the following line
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# BODY
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#
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# Test specific settings. Do not hand edit these lines; the fcm_job.sh script will set these
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# (via sed operating on this template job file). Note that the number of compute nodes required
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# is also set by the fcm_job.sh on the PBS select header line above.
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#
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# These variables are needed by post_test_tidyup function in all_functions.sh
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#
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export INPUT_DIR=DEF_INPUT_DIR
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export CONFIG_DIR=DEF_CONFIG_DIR
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export TOOLS_DIR=DEF_TOOLS_DIR
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export NEMO_VALIDATION_DIR=DEF_NEMO_VALIDATION
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export NEW_CONF=DEF_NEW_CONF
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export CMP_NAM=DEF_CMP_NAM
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export TEST_NAME=DEF_TEST_NAME
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export EXE_DIR=DEF_EXE_DIR
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ulimit -c unlimited
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ulimit -s unlimited
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#
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# end of set up
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###############################################################
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#
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# change to the working directory
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#
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cd $EXE_DIR
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echo Directory is `pwd`
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if [ $XCORES -gt 0 ]; then
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#
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# Run MPMD case
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#
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#XIOS will run on a separate node so will run in parallel queue
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if [ ! -f ./xios_server.exe ] && [ -f ${XIO_HOME}/bin/xios_server.exe ]; then
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cp ${XIO_HOME}/bin/xios_server.exe .
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fi
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if [ ! -f ./xios_server.exe ]; then
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echo "./xios_server.exe not found"
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echo "run aborted"
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exit
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fi
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echo time aprun -b -n $XCORES -N $X_PER_NODE ./xios_server.exe : -n $OCORES -N $O_PER_NODE ./nemo
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time aprun -b -n $XCORES -N $X_PER_NODE ./xios_server.exe : -n $OCORES -N $O_PER_NODE ./nemo
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#
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else
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#
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# Run SPMD case
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#
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echo time aprun -b -n $OCORES -N $O_PER_NODE ./nemo
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time aprun -b -n $OCORES -N $O_PER_NODE ./nemo
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fi
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#
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#
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post_test_tidyup
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# END_BODY
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# Don't remove neither change the previous line
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exit
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