#!/bin/bash
#SBATCH --account=nn5002k
#SBATCH --job-name=HINDERA5
####SBATCH --qos=devel
#SBATCH --partition=normal
#SBATCH --time=60:30:00
#SBATCH --nodes=9
#SBATCH --ntasks-per-node=128
#SBATCH --mail-type=ALL                                            # Mail events (NONE, BEGIN, END, FAIL, ALL)
#SBATCH --mail-user=robinson.hordoir@hi.no                             # email to user
#SBATCH --output=NAA10KM.out 
#SBATCH --error=NAA10KM.err
export DISPLAY=""
#
export CRAY_ROOTFS=DSL
set -x
ulimit -c unlimited
#
#
Y1=1971
Y2=1981
np=1024

PAR_NAME=NAA10KM

# Where Make sure I am in the ctore outputs
OUTDIR=/cluster/work/users/robinson/NAA10KM/OUTPUT_NEMO_4.2.2_ALL_ERA5
# Where to store restarts
RESTARTS=/cluster/work/users/robinson/NAA10KM/RESTARTS_NEMO_4.2.2_ALL_ERA5
RUNDIR=/cluster/work/users/robinson/NAA10KM/RUNDIR_NEMO_4.2.2_ALL_ERA5
cd ${RUNDIR}
# change read permissions of output files
umask a+r
# For hexagon use: 
JY=${Y1}
JYP=`expr ${JY} + 1`
JYM=`expr ${JY} - 1`

while [ ${JY} -le ${Y2} ]; do

    # Test if leap year   
    leapy=$(leap.bash $JY)
    rm -rf ocean.output
##    cp namelist_cfg_naa10km_1942 namelist_cfg
    cp namelist_cfg_naa10km_1943_1992 namelist_cfg
###    cp namelist_cfg_naa10km_1993_present namelist_cfg

    sed -i "s/XXXX/${JY}/g" namelist_cfg
    echo $leapy
    if [ ${leapy} -eq 0 ]; then
    sed -i 's/NTSTEP/52560/g' namelist_cfg
    fi
    if [ ${leapy} -eq 1 ]; then
    sed -i 's/NTSTEP/52704/g' namelist_cfg
    fi



    ## link to restart files
    rm -rf restart_*.nc
    rm -rf 1_restart_*.nc 

    pr=0
    while [ $pr -lt $np ] ; do
    if [ $pr -lt 10 ] ;    then
      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_000${pr}.nc restart_oce_000${pr}.nc
      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_000${pr}.nc restart_ice_000${pr}.nc

    else
      if [ $pr -lt 100 ] ;    then
      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_00${pr}.nc restart_oce_00${pr}.nc
      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_00${pr}.nc restart_ice_00${pr}.nc

   else
      if [ $pr -lt 1000 ] ;   then
      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_0${pr}.nc restart_oce_0${pr}.nc
      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_0${pr}.nc restart_ice_0${pr}.nc
    
      else
      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_${pr}.nc restart_oce_${pr}.nc
      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_${pr}.nc restart_ice_${pr}.nc

      fi
      fi
    fi
       ((pr+=1))
    done


    mpirun -n ${np} ./nemo.exe : -np 1 ./xios_server.exe 
    
    chmod a+r ./* 

    #### Mv outputs 

    mv *${PAR_NAME}_*${JY}0101_${JY}1231_*.nc ${OUTDIR}

    JY=`expr ${JY} + 1`
    JYP=`expr ${JY} + 1`
    JYM=`expr ${JY} - 1`


    ## Mv restart files into standard name files for next run
    pr=0
    while [ $pr -lt $np ] ; do
    if [ $pr -lt 10 ] ;    then
     mv *${PAR_NAME}*_restart_oce_000${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_000${pr}.nc
     mv *${PAR_NAME}*_restart_ice_000${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_000${pr}.nc 

    else
      if [ $pr -lt 100 ] ;    then
      mv *${PAR_NAME}*_restart_oce_00${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_00${pr}.nc
      mv *${PAR_NAME}*_restart_ice_00${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_00${pr}.nc  

    else
      if [ $pr -lt 1000 ] ;    then	  
      mv *${PAR_NAME}*_restart_oce_0${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_0${pr}.nc
      mv *${PAR_NAME}*_restart_ice_0${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_0${pr}.nc 
   
    else
      mv *${PAR_NAME}*_restart_oce_${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_${pr}.nc
      mv *${PAR_NAME}*_restart_ice_${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_${pr}.nc 
   
      fi
     fi
    fi
       ((pr+=1))
    done

done

exit $?
#