Add ecearth job script

cfgs/SPITZ12/RUNDIR/job_nemo_ecearth.sh

@@ -0,0 +1,132 @@
+#!/bin/bash
+#SBATCH --account=nn5002k
+#SBATCH --job-name=D-ECEARTH
+####SBATCH --qos=devel
+#SBATCH --partition=normal
+#SBATCH --time=60:30:00
+#SBATCH --nodes=9
+#SBATCH --ntasks-per-node=128
+#SBATCH --mail-type=ALL                                            # Mail events (NONE, BEGIN, END, FAIL, ALL)
+#SBATCH --mail-user=robinson.hordoir@hi.no                             # email to user
+#SBATCH --output=NAA10KM.out 
+#SBATCH --error=NAA10KM.err
+export DISPLAY=""
+#
+export CRAY_ROOTFS=DSL
+set -x
+ulimit -c unlimited
+#
+#
+Y1=1950
+Y2=1950
+np=1024
+
+PAR_NAME=NAA10KM
+
+# Where Make sure I am in the ctore outputs
+OUTDIR=/cluster/work/users/robinson/NAA10KM/OUTPUT_GIT_ECEARTH
+# Where to store restarts
+RESTARTS=/cluster/work/users/robinson/NAA10KM/RESTARTS_GIT_ECEARTH
+RUNDIR=/cluster/work/users/robinson/NAA10KM/RUNDIR_GIT_ECEARTH
+cd ${RUNDIR}
+# change read permissions of output files
+umask a+r
+# For hexagon use: 
+JY=${Y1}
+JYP=`expr ${JY} + 1`
+JYM=`expr ${JY} - 1`
+
+while [ ${JY} -le ${Y2} ]; do
+
+    # Test if leap year   
+    leapy=$(leap.bash $JY)
+    rm -rf ocean.output
+    cp namelist_cfg_naa10km_ecearth_init namelist_cfg
+    ##cp namelist_cfg_naa10km_ecearth namelist_cfg
+   
+    sed -i "s/XXXX/${JY}/g" namelist_cfg
+    echo $leapy
+    if [ ${leapy} -eq 0 ]; then
+    sed -i 's/NTSTEP/52560/g' namelist_cfg
+    fi
+    if [ ${leapy} -eq 1 ]; then
+    sed -i 's/NTSTEP/52704/g' namelist_cfg
+    fi
+
+
+
+    ## link to restart files
+    rm -rf restart_*.nc
+    rm -rf 1_restart_*.nc 
+
+    pr=0
+    while [ $pr -lt $np ] ; do
+    if [ $pr -lt 10 ] ;    then
+      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_000${pr}.nc restart_oce_000${pr}.nc
+      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_000${pr}.nc restart_ice_000${pr}.nc
+
+    else
+      if [ $pr -lt 100 ] ;    then
+      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_00${pr}.nc restart_oce_00${pr}.nc
+      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_00${pr}.nc restart_ice_00${pr}.nc
+
+   else
+      if [ $pr -lt 1000 ] ;   then
+      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_0${pr}.nc restart_oce_0${pr}.nc
+      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_0${pr}.nc restart_ice_0${pr}.nc
+    
+      else
+      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_${pr}.nc restart_oce_${pr}.nc
+      ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_${pr}.nc restart_ice_${pr}.nc
+
+      fi
+      fi
+    fi
+       ((pr+=1))
+    done
+
+
+    mpirun -n ${np} ./nemo.exe : -np 1 ./xios_server.exe 
+    
+    chmod a+r ./* 
+
+    #### Mv outputs 
+
+    mv *${PAR_NAME}_*${JY}0101_${JY}1231_*.nc ${OUTDIR}
+
+    JY=`expr ${JY} + 1`
+    JYP=`expr ${JY} + 1`
+    JYM=`expr ${JY} - 1`
+
+
+    ## Mv restart files into standard name files for next run
+    pr=0
+    while [ $pr -lt $np ] ; do
+    if [ $pr -lt 10 ] ;    then
+     mv *${PAR_NAME}*_restart_oce_000${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_000${pr}.nc
+     mv *${PAR_NAME}*_restart_ice_000${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_000${pr}.nc 
+
+    else
+      if [ $pr -lt 100 ] ;    then
+      mv *${PAR_NAME}*_restart_oce_00${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_00${pr}.nc
+      mv *${PAR_NAME}*_restart_ice_00${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_00${pr}.nc  
+
+    else
+      if [ $pr -lt 1000 ] ;    then	  
+      mv *${PAR_NAME}*_restart_oce_0${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_0${pr}.nc
+      mv *${PAR_NAME}*_restart_ice_0${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_0${pr}.nc 
+   
+    else
+      mv *${PAR_NAME}*_restart_oce_${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_${pr}.nc
+      mv *${PAR_NAME}*_restart_ice_${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_${pr}.nc 
+   
+      fi
+     fi
+    fi
+       ((pr+=1))
+    done
+
+done
+
+exit $?
+#