142 lines
4.0 KiB
Bash
142 lines
4.0 KiB
Bash
#!/bin/bash
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#SBATCH --account=nn5002k
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#SBATCH --job-name=LNAA10KM
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####SBATCH --qos=devel
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#SBATCH --partition=normal
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#SBATCH --time=6:20:00
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#SBATCH --nodes=8
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#SBATCH --ntasks-per-node=128
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#SBATCH --mail-type=ALL # Mail events (NONE, BEGIN, END, FAIL, ALL)
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#SBATCH --mail-user=robinson.hordoir@hi.no # email to user
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#SBATCH --output=NAA10KM.out
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#SBATCH --error=NAA10KM.err
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export DISPLAY=""
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#
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export CRAY_ROOTFS=DSL
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set -x
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ulimit -c unlimited
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#
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#
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Y1=1970
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Y2=1970
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np=1024
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PAR_NAME=NAA10KM
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# Where Make sure I am in the ctore outputs
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OUTDIR=/cluster/work/users/robinson/NAA10KM/OUTPUT_NEMO4_TS
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# Where to store restarts
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RESTARTS=/cluster/work/users/robinson/NAA10KM/RESTARTS_NEMO4_TS
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RUNDIR=/cluster/work/users/robinson/NAA10KM/RUNDIR_NEMO4_TS
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cd ${RUNDIR}
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# change read permissions of output files
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umask a+r
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# For hexagon use:
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JY=${Y1}
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JYP=`expr ${JY} + 1`
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JYM=`expr ${JY} - 1`
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while [ ${JY} -le ${Y2} ]; do
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# Test if leap year
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leapy=$(leap.ksh $JY)
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rm -rf ocean.output
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### cp namelist_cfg_naa10km_1958 namelist_cfg
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cp namelist_cfg_naa10km_1958_1978 namelist_cfg
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## cp 1_namelist_cfg_naa10km_1958_1978 1_namelist_cfg
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## cp namelist_cfg_naa10km_1979_1992_era5_rt namelist_cfg
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### cp namelist_cfg_naa10km_1993_2019_era5 namelist_cfg
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sed -i "s/XXXX/${JY}/g" namelist_cfg
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if [ ${leapy} -eq 0 ]; then
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sed -i 's/NTSTEP/52560/g' namelist_cfg
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fi
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if [ ${leapy} -eq 1 ]; then
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sed -i 's/NTSTEP/52704/g' namelist_cfg
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fi
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sed -i "s/XXXX/${JY}/g" 1_namelist_cfg
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if [ ${leapy} -eq 0 ]; then
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sed -i 's/NTSTEP/157680/g' 1_namelist_cfg
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fi
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if [ ${leapy} -eq 1 ]; then
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sed -i 's/NTSTEP/158112/g' 1_namelist_cfg
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fi
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## link to restart files
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rm -rf restart_*.nc
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rm -rf 1_restart_*.nc
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pr=0
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while [ $pr -lt $np ] ; do
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if [ $pr -lt 10 ] ; then
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ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_000${pr}.nc restart_oce_000${pr}.nc
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ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_000${pr}.nc restart_ice_000${pr}.nc
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else
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if [ $pr -lt 100 ] ; then
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ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_00${pr}.nc restart_oce_00${pr}.nc
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ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_00${pr}.nc restart_ice_00${pr}.nc
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else
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if [ $pr -lt 1000 ] ; then
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ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_0${pr}.nc restart_oce_0${pr}.nc
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ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_0${pr}.nc restart_ice_0${pr}.nc
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else
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ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_${pr}.nc restart_oce_${pr}.nc
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ln -s ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_${pr}.nc restart_ice_${pr}.nc
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fi
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fi
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fi
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((pr+=1))
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done
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mpirun -n ${np} ./nemo.exe
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chmod a+r ./*
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#### Mv outputs
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mv *${PAR_NAME}_*${JY}0101_${JY}1231_*.nc ${OUTDIR}
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JY=`expr ${JY} + 1`
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JYP=`expr ${JY} + 1`
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JYM=`expr ${JY} - 1`
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## Mv restart files into standard name files for next run
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pr=0
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while [ $pr -lt $np ] ; do
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if [ $pr -lt 10 ] ; then
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mv *${PAR_NAME}*_restart_oce_000${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_000${pr}.nc
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mv *${PAR_NAME}*_restart_ice_000${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_000${pr}.nc
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else
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if [ $pr -lt 100 ] ; then
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mv *${PAR_NAME}*_restart_oce_00${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_00${pr}.nc
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mv *${PAR_NAME}*_restart_ice_00${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_00${pr}.nc
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else
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if [ $pr -lt 1000 ] ; then
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mv *${PAR_NAME}*_restart_oce_0${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_0${pr}.nc
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mv *${PAR_NAME}*_restart_ice_0${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_0${pr}.nc
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else
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mv *${PAR_NAME}*_restart_oce_${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_oce_in_${pr}.nc
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mv *${PAR_NAME}*_restart_ice_${pr}.nc ${RESTARTS}/${JY}_${PAR_NAME}_restart_ice_in_${pr}.nc
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fi
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fi
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fi
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((pr+=1))
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done
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done
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exit $?
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#
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